Package: DVHmetrics 0.4.2.0.999
DVHmetrics: Analyze Dose-Volume Histograms and Check Constraints
Functionality for analyzing dose-volume histograms (DVH) in radiation oncology: Read DVH text files, calculate DVH metrics as well as generalized equivalent uniform dose (gEUD), biologically effective dose (BED), equivalent dose in 2 Gy fractions (EQD2), normal tissue complication probability (NTCP), and tumor control probability (TCP). Show DVH diagrams, check and visualize quality assurance constraints for the DVH. Includes web-based graphical user interface.
Authors:
DVHmetrics_0.4.2.0.999.tar.gz
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DVHmetrics_0.4.2.0.999.tar.gz(r-4.5-noble)DVHmetrics_0.4.2.0.999.tar.gz(r-4.4-noble)
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|DVHmetrics.html✨
DVHmetrics/json (API)
| # Install 'DVHmetrics' in R: |
| install.packages('DVHmetrics', repos = c('https://dwoll.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dwoll/dvhmetrics/issues
- dataConstr - Constraint data frame
- dataMZ - DVH data from 3 patients
Last updated 7 months agofrom:5151a41584. Checks:ERROR: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Sep 02 2024 |
| R-4.5-win | WARNING | Sep 02 2024 |
| R-4.5-linux | WARNING | Sep 02 2024 |
| R-4.4-win | WARNING | Sep 02 2024 |
| R-4.4-mac | WARNING | Sep 02 2024 |
| R-4.3-win | WARNING | Sep 02 2024 |
| R-4.3-mac | WARNING | Sep 02 2024 |
Exports:checkConstraintconvertDVHconvertDVHsmoothgetBEDgetDMEANgetEQD2getEUDgetIsoEffDgetMeanDVHgetMetricgetNTCPgetTCPmergeDVHreadConstraintreadDVHrunGUIsaveConstraintsaveDVHsaveMetricshowConstraintshowDVHshowMeanDVH
Dependencies:base64encbslibcachemclicolorspacecommonmarkcrayoncrosstalkdigestDTevaluatefansifarverfastmapfontawesomefsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrpromisesR6rappdirsRColorBrewerRcppreshape2rlangrmarkdownsassscalesshinysourcetoolsstringistringrtibbletinytexutf8vctrsviridisLitewithrxfunxtableyaml
Analyzing dose-volume histograms using DVHmetrics
Rendered fromDVHmetrics.Rnwusingknitr::knitron Sep 02 2024.Last update: 2023-07-25
Started: 2015-01-23
Using the DVHmetrics web application
Rendered fromDVHshiny.Rnwusingknitr::knitron Sep 02 2024.Last update: 2019-07-15
Started: 2015-01-26
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analyze Dose-Volume Histograms and Check Constraints | DVHmetrics-package DVHmetrics |
| Check constraints on dose-volume histograms (DVH) | checkConstraint checkConstraint.DVHLst checkConstraint.DVHLstLst checkConstraint.DVHs |
| Convert between differential and cumulative DVH | convertDVH convertDVH.DVHLst convertDVH.DVHLstLst convertDVH.DVHs convertDVH.matrix |
| Convert between differential and cumulative DVH | convertDVHsmooth convertDVHsmooth.DVHLst convertDVHsmooth.DVHLstLst convertDVHsmooth.DVHs convertDVHsmooth.matrix |
| Constraint data frame | dataConstr |
| DVH data from 3 patients | dataMZ |
| Calculate biologically effective dose (BED) | getBED getBED.default getBED.DVHLst getBED.DVHLstLst getBED.DVHs |
| DMEAN and other dose metrics | getDMEAN getDMEAN.DVHLst getDMEAN.DVHLstLst getDMEAN.DVHs |
| 2Gy fractions biologically equivalent dose (EQD2) | getEQD2 getEQD2.default getEQD2.DVHLst getEQD2.DVHLstLst getEQD2.DVHs |
| Generalized equivalent uniform dose (gEUD) | getEUD getEUD.DVHLst getEUD.DVHLstLst getEUD.DVHs |
| Isoeffective dose calculation | getIsoEffD getIsoEffD.default getIsoEffD.DVHLst getIsoEffD.DVHLstLst getIsoEffD.DVHs |
| Point-wise mean DVH with point-wise SDs | getMeanDVH getMeanDVH.DVHLst getMeanDVH.DVHLstLst getMeanDVH.DVHs |
| Calculate dose-volume-histogram metrics | getMetric getMetric.DVHLst getMetric.DVHLstLst getMetric.DVHs |
| Normal tissue complication probability (NTCP) | getNTCP getNTCP.DVHLst getNTCP.DVHLstLst getNTCP.DVHs |
| Tumor control probability (TCP) | getTCP |
| Merge existing DVH objects | mergeDVH |
| Print basic information about one or more DVHs | print.DVHLst print.DVHLstLst print.DVHs |
| Read constraint definitions from text file | readConstraint |
| Read DVH text files | readDVH |
| Open web-based GUI in browser | runGUI |
| Save constraint result to file | saveConstraint |
| Save DVH diagram to file | saveDVH |
| Save DVH metrics to file | saveMetric saveMetric.data.frame saveMetric.list |
| Display constraints for cumulative dose-volume histograms | showConstraint showConstraint.DVHLst showConstraint.DVHLstLst showConstraint.DVHs |
| Display dose volume histograms | showDVH showDVH.DVHLst showDVH.DVHLstLst showDVH.DVHs |
| Show average dose volume histograms | showMeanDVH |
