Package: DVHmetrics 0.4.2.0.999

DVHmetrics: Analyze Dose-Volume Histograms and Check Constraints

Functionality for analyzing dose-volume histograms (DVH) in radiation oncology: Read DVH text files, calculate DVH metrics as well as generalized equivalent uniform dose (gEUD), biologically effective dose (BED), equivalent dose in 2 Gy fractions (EQD2), normal tissue complication probability (NTCP), and tumor control probability (TCP). Show DVH diagrams, check and visualize quality assurance constraints for the DVH. Includes web-based graphical user interface.

Authors:Daniel Wollschlaeger [aut, cre], Heiko Karle [aut], Heinz Schmidberger [ctb]

DVHmetrics_0.4.2.0.999.tar.gz
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DVHmetrics.pdf |DVHmetrics.html✨
DVHmetrics/json (API)

# Install 'DVHmetrics' in R:

install.packages('DVHmetrics', repos = c('https://dwoll.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dwoll/dvhmetrics/issues

Datasets:

dataConstr - Constraint data frame
dataMZ - DVH data from 3 patients

On CRAN:

6.03 score 12 stars 338 downloads 3 mentions 22 exports 67 dependencies

Last updated 15 days agofrom:e8e8f87503. Checks:1 OK, 8 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 18 2025
R-4.5-win	NOTE	Mar 18 2025
R-4.5-mac	NOTE	Mar 18 2025
R-4.5-linux	NOTE	Mar 18 2025
R-4.4-win	NOTE	Mar 18 2025
R-4.4-mac	NOTE	Mar 18 2025
R-4.4-linux	NOTE	Mar 18 2025
R-4.3-win	NOTE	Mar 18 2025
R-4.3-mac	NOTE	Mar 18 2025

Exports:checkConstraint convertDVH convertDVHsmooth getBED getDMEAN getEQD2 getEUD getIsoEffD getMeanDVH getMetric getNTCP getTCP mergeDVH readConstraint readDVH runGUI saveConstraint saveDVH saveMetric showConstraint showDVH showMeanDVH

Dependencies:base64enc bslib cachem cli colorspace commonmark crayon crosstalk digest DT evaluate fansi farver fastmap fontawesome fs ggplot2 glue gtable highr htmltools htmlwidgets httpuv isoband jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval lifecycle magrittr MASS Matrix memoise mgcv mime munsell nlme pillar pkgconfig plyr promises R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown sass scales shiny sourcetools stringi stringr tibble tinytex utf8 vctrs viridisLite withr xfun xtable yaml

Analyzing dose-volume histograms using DVHmetrics

Rendered fromDVHmetrics.Rnwusingknitr::knitron Mar 18 2025.

Last update: 2024-10-11
Started: 2015-01-23

Using the DVHmetrics web application

Rendered fromDVHshiny.Rnwusingknitr::knitron Mar 18 2025.

Last update: 2019-07-15
Started: 2015-01-26

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Analyze Dose-Volume Histograms and Check Constraints	DVHmetrics-package DVHmetrics
Check constraints on dose-volume histograms (DVH)	checkConstraint checkConstraint.DVHLst checkConstraint.DVHLstLst checkConstraint.DVHs
Convert between differential and cumulative DVH	convertDVH convertDVH.DVHLst convertDVH.DVHLstLst convertDVH.DVHs convertDVH.matrix
Convert between differential and cumulative DVH	convertDVHsmooth convertDVHsmooth.DVHLst convertDVHsmooth.DVHLstLst convertDVHsmooth.DVHs convertDVHsmooth.matrix
Constraint data frame	dataConstr
DVH data from 3 patients	dataMZ
Calculate biologically effective dose (BED)	getBED getBED.default getBED.DVHLst getBED.DVHLstLst getBED.DVHs
DMEAN and other dose metrics	getDMEAN getDMEAN.DVHLst getDMEAN.DVHLstLst getDMEAN.DVHs
2Gy fractions biologically equivalent dose (EQD2)	getEQD2 getEQD2.default getEQD2.DVHLst getEQD2.DVHLstLst getEQD2.DVHs
Generalized equivalent uniform dose (gEUD)	getEUD getEUD.DVHLst getEUD.DVHLstLst getEUD.DVHs
Isoeffective dose calculation	getIsoEffD getIsoEffD.default getIsoEffD.DVHLst getIsoEffD.DVHLstLst getIsoEffD.DVHs
Point-wise mean DVH with point-wise SDs	getMeanDVH getMeanDVH.DVHLst getMeanDVH.DVHLstLst getMeanDVH.DVHs
Calculate dose-volume-histogram metrics	getMetric getMetric.DVHLst getMetric.DVHLstLst getMetric.DVHs
Normal tissue complication probability (NTCP)	getNTCP getNTCP.DVHLst getNTCP.DVHLstLst getNTCP.DVHs
Tumor control probability (TCP)	getTCP
Merge existing DVH objects	mergeDVH
Print basic information about one or more DVHs	print.DVHLst print.DVHLstLst print.DVHs
Read constraint definitions from text file	readConstraint
Read DVH text files	readDVH
Open web-based GUI in browser	runGUI
Save constraint result to file	saveConstraint
Save DVH diagram to file	saveDVH
Save DVH metrics to file	saveMetric saveMetric.data.frame saveMetric.list
Display constraints for cumulative dose-volume histograms	showConstraint showConstraint.DVHLst showConstraint.DVHLstLst showConstraint.DVHs
Display dose volume histograms	showDVH showDVH.DVHLst showDVH.DVHLstLst showDVH.DVHs
Show average dose volume histograms	showMeanDVH